張娟娟 喬玲 朱恩東
(天津醫(yī)科大學(xué)代謝病醫(yī)院內(nèi)分泌研究所 衛(wèi)生部激素與發(fā)育重點(diǎn)實(shí)驗(yàn)室 天津市代謝性疾病重點(diǎn)實(shí)驗(yàn)室,天津 300070)
長(zhǎng)鏈非編碼RNA AK043773在脂肪細(xì)胞分化中的作用
張娟娟 喬玲 朱恩東
(天津醫(yī)科大學(xué)代謝病醫(yī)院內(nèi)分泌研究所 衛(wèi)生部激素與發(fā)育重點(diǎn)實(shí)驗(yàn)室 天津市代謝性疾病重點(diǎn)實(shí)驗(yàn)室,天津 300070)
探索長(zhǎng)鏈非編碼RNA(lncRNA)AK043773在脂肪細(xì)胞分化過(guò)程中的表達(dá)變化和調(diào)控作用。將小鼠前脂肪細(xì)胞成脂誘導(dǎo),利用實(shí)時(shí)定量PCR技術(shù)檢測(cè)成脂分化調(diào)控基因KLF7及AK043773的表達(dá),構(gòu)建AK043773過(guò)表達(dá)載體檢測(cè)其對(duì)成脂分化的影響。經(jīng)UCSC數(shù)據(jù)庫(kù)檢索發(fā)現(xiàn)AK043773位于KLF7基因4號(hào)外顯子的3'端下游,骨髓基質(zhì)細(xì)胞系ST2和前脂肪細(xì)胞系3T3-L1成脂誘導(dǎo)分化后,實(shí)時(shí)定量PCR檢測(cè)結(jié)果顯示AK043773及KLF7表達(dá)協(xié)同下調(diào);構(gòu)建pCDNA3.1-AK043773過(guò)表達(dá)載體,轉(zhuǎn)染ST2細(xì)胞后能顯著提高AK043773的表達(dá),進(jìn)行脂肪細(xì)胞分化條件誘導(dǎo),通過(guò)油紅O染色及OD520nm吸光值檢測(cè)可見(jiàn)AK043773過(guò)表達(dá)顯著抑制ST2細(xì)胞中脂滴產(chǎn)生。AK043773及KLF7在脂肪細(xì)胞分化過(guò)程中協(xié)同下調(diào),上調(diào)AK043773的表達(dá)可顯著抑制脂肪細(xì)胞分化。
長(zhǎng)鏈非編碼RNA;AK043773;脂肪細(xì)胞分化;KLF7
肥胖的發(fā)病率在我國(guó)日益上升,2013年針對(duì)我國(guó)大于20歲的成年人進(jìn)行統(tǒng)計(jì),肥胖發(fā)病率為8.8%,超重人群則達(dá)到55.7%[1]。肥胖的發(fā)生是脂肪異常堆積的結(jié)果,對(duì)脂肪細(xì)胞分化機(jī)制的深入研究有益于為肥胖的治療提供有效策略[2]。脂肪細(xì)胞的分化過(guò)程是多條信號(hào)通路以及大量轉(zhuǎn)錄因子協(xié)同級(jí)聯(lián)調(diào)控的結(jié)果[3]。近期研究發(fā)現(xiàn)kruppel樣鋅指轉(zhuǎn)錄因子家族(Kruppel-like factor,KLF)成員廣泛參與脂肪細(xì)胞分化[4]。在人前脂肪細(xì)胞和小鼠3T3-L1細(xì)胞中過(guò)表達(dá)KLF7可以顯著抑制脂滴產(chǎn)生,并顯著抑制脂肪細(xì)胞特異性基因PPARγ、C/EBPα、aP2和adipsin的表達(dá)[5]。此外,有研究顯示長(zhǎng)鏈非編碼RNA(Long non-coding RNA,lncRNA)也參與脂肪細(xì)胞分化過(guò)程的調(diào)控[6]。lncRNA是一類片段長(zhǎng)度大于200 bp的內(nèi)源性RNA分子,人類基因組中只有大約1%具有蛋白編碼潛能,然而在特定的發(fā)育節(jié)點(diǎn)卻有大約70%的基因組轉(zhuǎn)錄,其中多數(shù)轉(zhuǎn)錄本屬于lncRNA,它們通常由RNA聚合酶II轉(zhuǎn)錄,經(jīng)RNA剪接過(guò)程成熟,具有譜系特異性并行使多種生物學(xué)功能。例如,胞核lncRNA參與形成核糖核蛋白復(fù)合體從而修飾染色體結(jié)構(gòu)影響基因轉(zhuǎn)錄活性,胞漿lncRNA可以直接或通過(guò)吸附microRNA調(diào)控mRNA 的穩(wěn)定[7-9]。Sun等[10]通過(guò)比對(duì)原代棕色和白色脂肪細(xì)胞、前體脂肪細(xì)胞以及成熟脂肪細(xì)胞的轉(zhuǎn)錄組,發(fā)現(xiàn)脂肪細(xì)胞分化過(guò)程中,175個(gè)lncRNAs被特異調(diào)控,而且C/EBPα和PPARγ可以結(jié)合于大量lncRNA的啟動(dòng)子區(qū)域,通過(guò)RNAi抑制其中10個(gè)lncRNAs可以顯著抑制脂滴形成。
本研究擬通過(guò)分析lncRNA AK043773的基因定位,鑒定其在脂肪細(xì)胞分化過(guò)程中的表達(dá)和功能,旨在為進(jìn)一步探索lncRNA AK043773在脂肪細(xì)胞分化中的分子作用機(jī)制奠定研究基礎(chǔ)。
小鼠骨髓基質(zhì)細(xì)胞ST2、前脂肪細(xì)胞3T3-L1和質(zhì)粒pCDNA3.1(+)由本實(shí)驗(yàn)室保存;SPF級(jí)雄性6周齡C57BL/6小鼠購(gòu)自北京華阜康生物科技股份有限公司;Trans5α感受態(tài)細(xì)胞、TransStart FastPfu DNA Polymerase和T4 DNA 連接酶購(gòu)自北京全式金生物技術(shù)有限公司;BamH I和EcoRⅤ內(nèi)切酶購(gòu)自美國(guó)Thermo Fisher;質(zhì)粒提取試劑盒和凝膠回收試劑盒購(gòu)自北京天根生化科技公司;Lipofectamine 2000 購(gòu) 自 美 國(guó) Invitrogen;α-MEM 和 DMEM/H 培養(yǎng)基購(gòu)自美國(guó)Hyclone;胎牛血清FBS購(gòu)自德國(guó)SeraPro;RNA提取試劑E.Z.N.A. Total RNA Kit購(gòu)自美國(guó)Omega Bio-tek;Reverse Transcription Kit 購(gòu)自美國(guó) Thermo Fisher;SGExcel Fast SYBR Mixture kits及特異性引物購(gòu)自生工生物工程有限公司;誘導(dǎo)試劑胰島素(Insulin)、地塞米松(Dex)、3-異丁基-1-甲基黃嘌呤(IBMX)和油紅O購(gòu)自美國(guó)Sigma;吲哚美辛(Indo)購(gòu)自美國(guó)Cyagen Biosciences Inc。
1.2.1 細(xì)胞的培養(yǎng)與成脂分化誘導(dǎo) 小鼠骨髓基質(zhì)細(xì)胞ST2用含10% FBS的α-MEM培養(yǎng)基,前脂肪細(xì)胞3T3-L1用含10% FBS的DMEM/H培養(yǎng)基,置于37℃、5% CO2培養(yǎng)箱內(nèi)培養(yǎng),待細(xì)胞長(zhǎng)至80%以上時(shí)傳代。將細(xì)胞接種于12孔板,細(xì)胞密度達(dá)90%以上時(shí)進(jìn)行成脂分化誘導(dǎo)。成脂誘導(dǎo)分化利用經(jīng)典的激素雞尾酒法,誘導(dǎo)試劑包含0.05 mmol/L 3-異丁基-1-甲基黃嘌呤、5 mg/L 胰島素、0.05 mmol/L吲哚美辛和0.05 μmol/L地塞米松。
1.2.2 pCDNA3.1- AK043773載體的構(gòu)建 設(shè)計(jì)合成擴(kuò)增AK043773片段的特異性引物,以C57BL/6小鼠肝臟DNA為模板,經(jīng)FastPfu DNA聚合酶擴(kuò)增獲得AK043773片段全長(zhǎng),將克隆片段與pCDNA3.1(+)載體分別進(jìn)行BamH I和EcoRⅤ內(nèi)切酶雙酶切,膠回收PCR片段及載體大片段后用T4 DNA 連接酶連接,連接產(chǎn)物轉(zhuǎn)化至大腸桿菌Trans5α感受態(tài)細(xì)胞,提取單克隆后雙酶切鑒定,鑒定正確克隆送交Invitrogen測(cè)序,測(cè)序正確載體命名為pCDNA3.1-AK043773載體。載體引物上游:5'-GCG GAT CCG AGA GGG CTG GAC TTC AG-3',下游5'-CCG GAT ATC CTT TTT TTA TAG AGC CTT GCA TTG G-3'。下劃線代表酶切位點(diǎn),其中GGATCC為BamH I,GATATC為EcoRⅤ。
1.2.3 pCDNA3.1及pCDNA3.1- AK043773載體轉(zhuǎn)染 轉(zhuǎn)染前1 d,將ST2細(xì)胞接種于12孔板,轉(zhuǎn)染當(dāng)天細(xì)胞融合度達(dá)70%-90%時(shí)進(jìn)行轉(zhuǎn)染。轉(zhuǎn)染試劑采用Lipofectamine 2000,轉(zhuǎn)染6 h后細(xì)胞換液,具體實(shí)驗(yàn)步驟依說(shuō)明書(shū)為準(zhǔn)。轉(zhuǎn)染24 h后可進(jìn)行成脂細(xì)胞分化誘導(dǎo);轉(zhuǎn)染48 h后可檢測(cè)轉(zhuǎn)染效率。
1.2.4 RT-qPCR檢測(cè)KLF7和lncRNA AK043773的表達(dá)水平 ST2和3T3-L1細(xì)胞誘導(dǎo)成脂分化3 d后收取細(xì)胞,pCDNA3.1及pCDNA3.1- AK043773載體轉(zhuǎn)染ST2細(xì)胞48 h后收取細(xì)胞,按照E.Z.N.A. Total RNA Kit說(shuō)明書(shū)分別提取各組細(xì)胞總RNA,利用Reverse Transcription Kit將 0.5 μg總 RNA 逆轉(zhuǎn)錄為cDNA。逆轉(zhuǎn)錄的條件:25℃ 10 min;42℃ 60 min;70℃ 10 min。
逆轉(zhuǎn)錄合成的cDNA作為模板,qPCR檢測(cè)KLF7和lncRNA AK043773的表達(dá)。根據(jù)SGExcel Fast SYBR Mixture kits試劑盒說(shuō)明書(shū)加入qPCR所需的2×Mix、cDNA和特異性引物反應(yīng)。反應(yīng)體系為20 μL,內(nèi)參為β-actin。反應(yīng)條件為:95℃預(yù)變性2 min;95℃變性30 s、57℃退火15 s、72℃延伸15 s,40個(gè)循環(huán)。PCR產(chǎn)物采用溶解曲線法分析,以確定樣品擴(kuò)增的特異性。采用2-ΔΔCt法計(jì)算目的基因?qū)嶒?yàn)組與對(duì)照組的表達(dá)差異,Ct值指反應(yīng)管中熒光信號(hào)達(dá)到一定閾值時(shí)所經(jīng)歷的循環(huán)數(shù)。所有實(shí)驗(yàn)重復(fù)3次。KLF7 qPCR引物上游5'-ACT GAC AAA CAA ACA GAC CCA G-3',下游 5'-GGT AGC GTT CCA ACT CAA GG-3';lncRNA AK043773 qPCR引物上游5'-ACG CCA GGG ATG GCA TTA-3',下游5'-GAG CCT TGC ATT GGT CAG T-3';β-actin qPCR引物上游5'-AAG ACC TCT ATG CCA ACA CAG-3',下游5'-GGA GGA GCA ATG ATC TTG ATC-3'。
1.2.5 油紅O染色及OD值檢測(cè) pCDNA3.1及pCDNA3.1- AK043773載體轉(zhuǎn)染ST2細(xì)胞24 h后,進(jìn)行成脂細(xì)胞分化誘導(dǎo),待脂滴成熟后棄細(xì)胞培養(yǎng)基,1×PBS洗2次;4%多聚甲醛固定15 min后棄液,1×PBS洗1次;加入60%異丙醇,室溫放置1-2 min后棄液;加入60%油紅O染液,染色5 min,蒸餾水漂洗2次,于倒置顯微鏡下觀察并拍照。拍照后棄水,將細(xì)胞培養(yǎng)板倒置晾干后,每孔加400 μL異丙醇萃取油紅O,常溫放置20 min,移至96孔板檢測(cè)吸光度,波長(zhǎng)設(shè)置520 nm。
1.2.6 統(tǒng)計(jì)學(xué)方法 采用SPSS17.0軟件進(jìn)行統(tǒng)計(jì)處理。實(shí)驗(yàn)數(shù)據(jù)以均數(shù)±標(biāo)準(zhǔn)差(x-±s)表示,兩組間比較采用獨(dú)立樣本t檢驗(yàn)。P<0.05為差異有統(tǒng)計(jì)學(xué)意義。
經(jīng)UCSC數(shù)據(jù)庫(kù)(http://genome.ucsc.edu/)檢索,lncRNA AK043773基因全長(zhǎng)2 720 bp,位于KLF7基因4號(hào)外顯子的下游(圖1)。

圖1 lncRNA AK043773的基因位點(diǎn)分析
為確定AK043773的編碼能力,經(jīng)蛋白編碼能力預(yù)測(cè)數(shù)據(jù)庫(kù)CPAT:Coding-Potential Assessment Tool(http://lilab.research.bcm.edu/cpat/index.php)分析,AK043773的蛋白編碼能力得分為0.13,作為對(duì)照,KLF7基因(NCBI序列參考編號(hào)為 NM_033563.2)的蛋白編碼能力得分為0.98。由此可見(jiàn),AK043773編碼蛋白的潛能極低,屬于非編碼RNA(圖2)。

圖2 lncRNA AK043773的蛋白編碼能力分析
ST2和3T3-L1細(xì)胞通過(guò)經(jīng)典的激素雞尾酒法成脂誘導(dǎo)分化3 d后,與未成脂分化細(xì)胞分別提取總RNA,逆轉(zhuǎn)錄后進(jìn)行RT-qPCR檢測(cè)。結(jié)果(圖3)顯示,與未成脂分化的細(xì)胞相比,在成脂分化的3T3-L1和ST2細(xì)胞中,KLF7分別顯著下降至0.80和0.47,lncRNA AK043773分別顯著下降至0.74和0.49。

圖3 KLF7和lncRNA AK043773在3T3-L1和ST2細(xì)胞成脂前后的表達(dá)水平
以雄性C57BL/6小鼠肝臟DNA為模板,通過(guò)PCR特異性擴(kuò)增2 720 bp的AK043773基因全長(zhǎng),通過(guò)BamH I和EcoR Ⅴ雙酶切位點(diǎn)克隆至pCDNA3.1(+)載體,命名為pCDNA3.1- AK043773。測(cè)序結(jié)果正確,PCR特異性擴(kuò)增片段與pCDNA3.1- AK043773載體雙酶切后進(jìn)行瓊脂糖凝膠電泳,結(jié)果均顯示載體構(gòu)建成功,擴(kuò)增片段及酶切結(jié)果見(jiàn)圖4。

圖4 AK043773基因PCR特異性擴(kuò)增、pCDNA3.1-AK043773載體PCR特異性擴(kuò)增及其雙酶切鑒定
pCDNA3.1及pCDNA3.1- AK043773載 體 分別轉(zhuǎn)染ST2細(xì)胞48 h后收取細(xì)胞,分別提取總RNA,逆轉(zhuǎn)錄后進(jìn)行RT-qPCR檢測(cè)。結(jié)果(圖5)顯示,與pCDNA3.1載體轉(zhuǎn)染組相比,轉(zhuǎn)染pCDNA-3.1-AK043773載體可以顯著提高ST2細(xì)胞中l(wèi)ncRNA AK043773的表達(dá)水平至13.06倍。

圖5 pCDNA3.1及pCDNA3.1-AK043773載體轉(zhuǎn)染ST2細(xì)胞后lncRNA AK043773的表達(dá)
pCDNA3.1及pCDNA3.1- AK043773載體分別轉(zhuǎn)染ST2細(xì)胞后誘導(dǎo)成脂分化,待脂滴成熟后進(jìn)行油紅O染色,pCDNA3.1- AK043773載體轉(zhuǎn)染組較pCDNA3.1載體轉(zhuǎn)染組細(xì)胞脂滴明顯減少;異丙醇萃取油紅O后經(jīng)OD520nm波長(zhǎng)吸光值檢測(cè),可見(jiàn)pCDNA3.1- AK043773載體轉(zhuǎn)染組較pCDNA3.1載體轉(zhuǎn)染組下降30%(圖6)。
肥胖被定義為體脂超標(biāo),肥胖患病率的持續(xù)上升使得脂肪組織及脂肪細(xì)胞生成被廣泛關(guān)注[11]。脂肪組織是非常活躍重要的內(nèi)分泌器官,對(duì)能量及代謝穩(wěn)態(tài)的維持至關(guān)重要[12]。脂肪細(xì)胞是脂肪組織的主要組成部分,脂肪細(xì)胞主要由成纖維樣前脂肪細(xì)胞分化發(fā)育而來(lái),脂肪細(xì)胞的分化是多種轉(zhuǎn)錄因子級(jí)聯(lián)反應(yīng)及各種調(diào)控因子調(diào)節(jié)的結(jié)果[13-15]。近期有研究顯示lncRNA廣泛參與生命活動(dòng)的發(fā)育和分化進(jìn)程[16-18]。2013年,Sun等[10]首次針對(duì)體外培養(yǎng)的小鼠的前白色、棕色脂肪細(xì)胞以及分化成熟的白色、棕色脂肪細(xì)胞,篩選得到polyA尾轉(zhuǎn)錄譜然后進(jìn)行RNA測(cè)序,鑒定了175個(gè)差異表達(dá)的lncRNA,其中很多脂肪細(xì)胞富集的lncRNA啟動(dòng)子區(qū)有PPARγ和C/EBPα的結(jié)合位點(diǎn),用RNAi抑制這些lncRNA的表達(dá)可以有效抑制成脂。2014年,Cooper等[19]在小鼠3T3-L1細(xì)胞中發(fā)現(xiàn)lncRNA NEAT1可以與SRp40通過(guò)調(diào)控PPARγ2的剪接影響成脂。2016年,Huang等[20]發(fā)現(xiàn)lncRNA H19可以通過(guò)組蛋白去乙酰化酶的表觀修飾抑制骨髓來(lái)源間充質(zhì)干細(xì)胞的成脂分化。這些研究結(jié)果提示lncRNA也參與了脂肪細(xì)胞的分化生成階段。

圖6 lncRNA AK043773對(duì)脂肪細(xì)胞分化的影響
在研究前期,對(duì)原代培養(yǎng)的小鼠骨髓基質(zhì)細(xì)胞進(jìn)行脂肪細(xì)胞誘導(dǎo)分化,72 h后采用芯片技術(shù)獲得脂肪細(xì)胞分化前后的lncRNA及mRNA表達(dá)譜。發(fā)現(xiàn)在成脂分化的細(xì)胞中KLF7表達(dá)顯著下調(diào),該結(jié)果與文獻(xiàn)報(bào)道一致[5],而位于KLF7基因4號(hào)外顯子下游的lncRNA AK043773協(xié)同下調(diào)。經(jīng)蛋白編碼能力預(yù)測(cè)數(shù)據(jù)庫(kù)Coding Potential Calculator(http://cpc.cbi.pku.edu.cn/programs/run_cpc.jsp) 分 析,lncRNA AK043773不具備編碼蛋白的潛能。通過(guò)RT-qPCR驗(yàn)證了芯片結(jié)果,從而提示lncRNA AK043773可能參與脂肪細(xì)胞分化的調(diào)控,而且其可能發(fā)揮負(fù)向調(diào)控的功能。通過(guò)構(gòu)建lncRNA AK043773的過(guò)表達(dá)載體并轉(zhuǎn)染ST2細(xì)胞,經(jīng)成脂誘導(dǎo)后證明了我們的猜想,即過(guò)表達(dá)lncRNA AK043773可以抑制脂肪細(xì)胞分化。
后續(xù)研究將驗(yàn)證lncRNA AK043773的蛋白編碼潛能,通過(guò)5'和3'cDNA末端快速克隆(RACE)實(shí)驗(yàn)確定其全長(zhǎng),通過(guò)分離脂肪分化前后細(xì)胞的胞核和胞漿部分,采用RT-qPCR技術(shù)確定lncRNA AK043773的亞細(xì)胞定位,通過(guò)設(shè)計(jì)合成lncRNA AK043773的siRNA驗(yàn)證其在脂肪細(xì)胞分化中的功能。本研究發(fā)現(xiàn)lncRNA AK043773位于KLF7基因的下游,后續(xù)研究還將探討其是否通過(guò)順式作用影響KLF7的表達(dá)發(fā)揮其抑制脂肪細(xì)胞分化的功能,從而進(jìn)一步深入的研究lncRNA AK043773發(fā)揮調(diào)控功能的分子機(jī)制,為闡釋脂肪細(xì)胞分化進(jìn)程的調(diào)控提供新理論。
本研究發(fā)現(xiàn)了一個(gè)新的lncRNA AK043773,其位于KLF7基因4號(hào)外顯子的下游,在成脂分化的ST2和3T3-L1細(xì)胞中表達(dá)下調(diào),在ST2細(xì)胞中過(guò)表達(dá)lncRNA AK043773可以抑制脂肪細(xì)胞分化。
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Role of Long Non-coding RNA AK043773 in Adipocyte Differentiation
ZHANG Juan-juan QIAO Ling ZHU En-dong
(Key Laboratory of Hormones and Development(Ministry of Health),Tianjin Key Laboratory of Metabolic Diseases,Metabolic Diseases Hospital & Institute of Endocrinology,Tianjin Medical University,Tianjin 300070)
This work is to investigate the expression changes and regulating role of long non-coding RNA(lncRNA)AK043773 in adipocyte differentiation. First,pre-adipocyte cells in mice were induced for adipogenesis. Then,the expressions of adipogenic differentiation regulating gene(KLF7)and AK043773 were measured by real-time quantitative PCR(RT-qPCR). Next,the overexpression vector for AK043773 was constructed for detecting its effects on adipogenic differentiation. According to search in UCSC database,the locus of AK043773 was in the 3'-end downstream of KLF7’s exon 4. The expressions of KLF7 and AK043773 were down-regulated coordinately in adipogenesis-induced and differentiated bone marrow stromal cell line ST2 and pre-adipocyte cells 3T3-L1. Furthermore,the overexpression vector pCDNA3.1-AK043773 was constructed and transfected into ST2 cells,which significantly enhanced the expression of AK043773,but inhibited the adipogenesis in ST2 cells by oil red O staining and OD520nmabsorbance test after the induction of adipocyte differentiation. All of results indicate that AK043773 and KLF7 coordinately down-regulate in adipocyte differentiation,and increasing the expression of AK043773 remarkably suppresses the differentiation of adipocyte.
lncRNA;AK043773;adipocyte differentiation;KLF7
10.13560/j.cnki.biotech.bull.1985.2017-0556
2017-07-04
國(guó)家自然科學(xué)基金項(xiàng)目(81501846),天津醫(yī)科大學(xué)代謝病醫(yī)院內(nèi)分泌研究所科學(xué)基金(2014RC01)
張娟娟,碩士研究生,研究方向:脂肪與成骨細(xì)胞分化調(diào)控研究;E-mail:839973071@qq.com
朱恩東,助理研究員,研究方向:脂肪與成骨細(xì)胞分化調(diào)控研究;E-mail:ezhu@tmu.edu.cn
(責(zé)任編輯 朱琳峰)